Boutique Hotels in San Juan, Puerto Rico

Compare 11 boutique hotels in San Juan (Old Town, Condado, Isla Verde). Rooftop pools, historic villas, and beach access. Check rates now.

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Check-out
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Rooms and Guests2 Guests, 1 room
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1-13 out of 13
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  • Popularity: high to low
8.9
Great708 total reviews
our site & Booking.com
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1598 yd from City Center18 yd from Ashford Avenue
Infinity PoolElemara SpaCasino
  • Iconic seashell-shaped architecture
  • Adults-only ocean infinity pool
  • LEED certified sustainable resort
FromUS$ 199 /nightSelect
6.8
Nice489 total reviews
our site & Booking.com
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1155 yd from City Center860 yd from Ashford Avenue
Water SlideSwim-up BarSaltwater Pool
  • Four pools with swim-up bar
  • Signature cocktails at Aqua Bar
  • Beachside hammocks
FromUS$ 159 /nightSelect
8.9
Great614 total reviews
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307 yd from City Center311 yd from Puerto Rico Convention Center
Infinity PoolCasinoFull-service Spa
  • Rooftop infinity pool with bay views
  • Extensive casino with 400+ slots
  • High-tech Central Plaza LED screen
FromUS$ 187 /nightSelect
8.6
Great426 total reviews
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1.5 mi from City Center773 yd from Centro Europa
Outdoor PoolSpa CenterFitness Club
  • Best of Best Hilton award winner
  • LIV Fitness Club elite programs
  • Historical rum tasting experiences
FromUS$ 113 /nightSelect
8.5
Great776 total reviews
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2.2 mi from City Center215 yd from San Juan Bautista Cathedral
Rooftop PoolHot TubFitness Center
  • Restored 360-year-old convent
  • Rooftop plunge pool with bay views
  • Daily Manager's Wine Reception
FromUS$ 183 /nightSelect
8.5
Great148 total reviews
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4.3 mi from City Center688 yd from Isla Verde Mall
Infinity PoolRooftop BarSeabed Restaurant
  • Rooftop infinity pool with ocean views
  • Kumo Rooftop Bar+Kitchen cocktails
  • Seabed-inspired restaurant experience
FromUS$ 142 /nightSelect
7.7
Very good117 total reviews
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1389 yd from City Center260 yd from Ashford Avenue
Rooftop PoolFrench RestaurantPrivate Terrace
  • Rooftop infinity pool overlooking lagoon
  • Mediterranean-inspired rooftop dining
  • Suites with private terrace and shower
FromUS$ 272 /nightSelect
8.1
Great1465 total reviews
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1.9 mi from City Center290 yd from Marina Old San Juan
Rooftop SundeckStone BathtubsPanoramic Elevator
  • Rooftop stone bathtubs with views
  • Awarded Best Hotel in Old San Juan
  • Moroccan-inspired rooms with local art
FromUS$ 105 /nightSelect
8.2
Great732 total reviews
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443 yd from City Center949 yd from Puerto Rico Convention Center
Rooftop PoolPool BarHot Tub
  • 360° rooftop deck with views
  • Located in safe Miramar area
  • Suites with full kitchens
FromUS$ 180 /nightSelect
7.8
Very good572 total reviews
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2.0 mi from City Center253 yd from Old San Juan
Rooftop PoolPool BarWalking Tours
  • Rooftop terrace with panoramic bay views
  • Restored 19th-century colonial architecture
  • Apartments with fully equipped kitchens
FromUS$ 145 /nightSelect
8.1
Great939 total reviews
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1.8 mi from City Center566 yd from Ocean Park Beach
Saltwater PoolRooftop TerraceNiche Restaurant
  • Award-winning Niche restaurant
  • Restored Spanish villa with eclectic decor
  • Saltwater pool with submerged seating
FromUS$ 89 /nightSelect
7.5
Very good442 total reviews
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1.1 mi from City Center323 yd from Ashford Avenue
Outdoor PoolWellness SpaFitness Center
  • Rooftop deck with whirlpool tub
  • In-room jetted bathtubs
  • Tropical courtyard with plunge pool
FromUS$ 126 /nightSelect
8.8
Great297 total reviews
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2.2 mi from City Center208 yd from San Juan Bautista Cathedral
JacuzziRooftop terraceLibrary
  • Historic 16th-century European decor
  • Rooftop terrace for events
  • Complimentary breakfast on silver trays
FromUS$ 159 /nightSelect

Boutique hotels in San Juan, Puerto Rico offer personalized stays with character-rich spaces. These properties are concentrated in Old San Juan, Condado, and Isla Verde, each with distinct atmospheres. Old San Juan features restored colonial buildings like the 350-year-old Hotel El Convento, with Spanish décor and a pool overlooking the bay. Condado hosts stylish hotels such as La Concha Resort with an infinity pool facing the Atlantic, and O:Live Boutique Hotel with a rooftop terrace overlooking the Condado Lagoon. Isla Verde provides beachfront options like Aire De Olive, a short drive from the airport. Rates range from mid-range to luxury, with amenities including rooftop pools, on-site dining, and spa services. Travelers should book ahead, especially during peak season, and note that many hotels offer beach club access.

Top-rated boutique hotels include the DoubleTree by Hilton San Juan (87/100), featuring modern rooms and a beach shuttle, and the Sheraton Puerto Rico Resort & Casino (90/100) with an infinity pool and multiple dining options. The adults-only O:Live Boutique Hotel (83/100) provides a Mediterranean-inspired rooftop pool and French restaurant. For a historic experience, Hotel El Convento (85/100) in Old San Juan offers a 24-hour front desk and evening wine receptions. The Condado Plaza Hotel (69/100) overlooks the lagoon and provides direct beach access. Each property delivers unique design and local flavor, catering to couples, business travelers, and families seeking a distinctive San Juan stay.