Best Affordable San Diego Beach Hotels

Compare 10 top-rated affordable beach hotels in San Diego. From Mission Bay to Shelter Island, find deals with free breakfast, pools, and beach access. Book now!

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1-50 out of 229
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  • Price: low to high
  • Price: high to low
  • Guest rating: high to low
  • Popularity: high to low
8.2
Great562 total reviews
our site & Booking.com
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3.4 mi from City Center
Private BeachOcean ClubSpa & Salon
  • Victorian beachfront icon since 1888
  • Private beach with fire pits
  • Outdoor holiday ice skating rink
FromUS$ 324 /nightSelect
8.1
Great1144 total reviews
our site & Booking.com
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5.6 mi from City Center1642 yd from SeaWorld San Diego
Full-Service MarinaAward-Winning SpaBungalow Rooms
  • Bungalow-style rooms on 44-acre island
  • Award-winning Condé Nast spa
  • Full-service marina with water sports
FromUS$ 319 /nightSelect
8.4
Great555 total reviews
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7.0 mi from City Center194 yd from Promenade at Pacific Beach Shopping Center
Private BeachKoi PondSpa
  • Exotic wildlife and tropical gardens
  • Private beach bonfires and luaus
  • Beachside spa with holistic treatments
FromUS$ 150 /nightSelect
7.9
Very good1201 total reviews
our site & Booking.com
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5.4 mi from City Center1340 yd from Belmont Park
Water SlidesKayak RentalsSpa
  • Water slides and multiple pools
  • Free kayak and paddleboard rentals
  • Award-winning eco-friendly spa
FromUS$ 101 /nightSelect
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4.4 mi from City Center696 yd from Shelter Island Yacht Basin
Private BeachAdult PoolWater Sports
  • Private beach exclusive to resort
  • Adults-only pool with bay views
  • Onsite water sports rental center
FromUS$ 133 /nightSelect
8.2
Great867 total reviews
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10.6 mi from City Center652 yd from San Diego Mormon Temple
Heated PoolTennis CourtRegency Lounge
  • 42,000 sq ft event space
  • Award-winning on-site dining
  • Year-round heated pool with lap lanes
FromUS$ 139 /nightSelect
8.2
Great404 total reviews
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1.0 mi from City Center933 yd from Seaport Village
Rooftop PoolYoga TerraceClub Lounge
  • Rooftop bar with Pacific views
  • Art by Holzer and Serra
  • Yoga terrace with video wall
FromUS$ 260 /nightSelect
9.1
Perfect514 total reviews
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1059 yd from City Center1377 yd from Petco Park
Kids ClubIndoor PoolSHAKE Restaurant
  • 12th-floor registration desk
  • Kids club with daily activities
  • Live music weekend evenings
FromUS$ 67 /nightSelect
8.0
Great3612 total reviews
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1.0 mi from City Center1247 yd from Seaport Village
Outdoor PoolAirport ShuttleRuth's Chris
  • Private balcony in every room
  • Adjacent to cruise terminal
  • Three on-site restaurants
FromUS$ 124 /nightSelect
8.0
Great315 total reviews
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2.3 mi from City Center1457 yd from San Diego Convention Center
Indoor Lazy RiverPickleball CourtsEV Charging
  • Indoor lazy river
  • Skyline-view signature restaurant
  • Flamingos on property
FromUS$ 292 /nightSelect
8.8
Great194 total reviews
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13.2 mi from City Center
Full-Service SpaVichy ShowerPutting Green
  • AAA Five Diamond luxury resort
  • Priority tee times at Torrey Pines
  • Craftsman architecture overlooking golf course
FromUS$ 329 /nightSelect
7.5
Very good616 total reviews
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13.0 mi from City Center346 yd from The Scripps Research Institute
Saltwater PoolTennis CourtsTorreyana Grille
  • Direct access to Torrey Pines Golf Course
  • Ocean and golf course views from rooms
  • Outdoor fire pits and seating
FromUS$ 99 /nightSelect
8.1
Great1333 total reviews
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6.0 mi from City Center521 yd from Belmont Park
Private BeachSeal SanctuaryBeach Cabanas
  • Private beach on Mission Bay
  • Rescue seal sanctuary on site
  • Suites with full kitchens
FromUS$ 95 /nightSelect
8.3
Great290 total reviews
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11.9 mi from City Center378 yd from Salk Institute
Saltwater PoolOrganic SpaBotanical Gardens
  • 10-acre botanical gardens
  • Award-winning organic spa
  • Saltwater pool with cabanas
FromUS$ 169 /nightSelect
8.4
Great1477 total reviews
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5.3 mi from City Center1182 yd from SeaWorld San Diego
Heated poolsWater sportsFirefly Restaurant
  • Deluxe bay view suites
  • Complimentary SeaWorld shuttle
  • Pet-friendly welcome amenities
FromUS$ 99 /nightSelect
8.2
Great474 total reviews
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1436 yd from City Center1139 yd from Seaport Village
Rooftop BarExecutive LoungeYoga Classes
  • Rooftop bar with fire pit
  • Executive lounge outdoor seating
  • Free yoga and fitness classes
FromUS$ 126 /nightSelect
8.1
Great349 total reviews
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1672 yd from City Center841 yd from Petco Park
Luggage StorageOn-site BarAir Conditioning
  • 10-min walk from Santa Fe Depot
  • Modern historical design blend
  • Walk-in showers in all rooms
FromUS$ 108 /nightSelect
8.7
Great1777 total reviews
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3.8 mi from City Center123 yd from Humphreys Backstage Live
Concert VenueKoi PondMarina Access
  • On-site concert venue with live music
  • Tropical grounds with koi ponds
  • Direct marina access for water activities
FromUS$ 148 /nightSelect
8.9
Great256 total reviews
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10.7 mi from City Center512 yd from La Jolla Cove
Heated PoolFarm-to-Table DiningBeach Gear
  • Only four-diamond hotel in La Jolla
  • Historic hotel since 1913
  • Award-winning NINE-TEN restaurant
FromUS$ 229 /nightSelect
7.2
Very good29 total reviews
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10.5 mi from City Center1352 yd from La Jolla Cove
Private BeachTennis CourtsBeach BBQ
  • Private beach access
  • Award-winning tennis resort
  • Beachfront barbecue setup
FromUS$ 316 /nightSelect
9.3
Perfect753 total reviews
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7.6 mi from City Center397 yd from Crystal Pier San Diego
Heated PoolFitness CenterBike Rentals
  • AAA Four Diamond beachfront winner
  • Direct beach access via locked entrance
  • Complimentary bikes and beach gear
FromUS$ 409 /nightSelect
9.0
Perfect265 total reviews
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7.5 mi from City Center68 yd from Crystal Pier San Diego
Rooftop DeckBicycle RentalTesla Charger
  • Only beachfront lifestyle hotel
  • In-room Jacuzzi with ocean view
  • Free beach gear and bike rentals
FromUS$ 309 /nightSelect
8.4
Great731 total reviews
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1.3 mi from City Center346 yd from Seaport Village
Indoor PoolFitness CenterNY West
  • Two-room suites with separate living
  • Complimentary evening social hour
  • Made-to-order free breakfast
FromUS$ 228 /nightSelect
7.6
Very good356 total reviews
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10.6 mi from City Center
M LoungeOutdoor BarEvent Spaces
  • M Lounge with panoramic views
  • Outdoor bar with fire pit
  • 23,000 sq ft event spaces
FromUS$ 145 /nightSelect
8.5
Great2109 total reviews
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4.1 mi from City Center155 yd from Shelter Island Yacht Basin
Private MarinaBlue Wave GrillBike Rentals
  • Shelter Island private marina
  • Bungalow rooms with marina views
  • Complimentary bike rentals
FromUS$ 100 /nightSelect
8.2
Great1095 total reviews
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2.9 mi from City Center896 yd from Travelers Aid Society
Panorama GrillOutdoor PoolAirport Shuttle
  • Panoramic marina and harbor views
  • On-site dining with marina views
  • Family-friendly live music events
FromUS$ 152 /nightSelect
7.9
Very good70 total reviews
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10.5 mi from City Center1556 yd from La Jolla Cove
Heated PoolFire PitsChildren's Pool
  • Complimentary beach chair and umbrella setup
  • Oceanfront dining using local ingredients
  • Daily s'mores and movie nights
FromUS$ 289 /nightSelect
6.4
Nice830 total reviews
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2.4 mi from City Center1435 yd from Hillcrest San Diego
Heated PoolFitness CenterBusiness Center
  • Warm cookie welcome on arrival
  • Bunk-bed family suite option
  • Heated pool and spa courtyard
FromUS$ 126 /nightSelect
7.8
Very good254 total reviews
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10.7 mi from City Center252 yd from La Jolla Cove
Heated PoolSpa ServicesDog Menu
  • Historic 1926 Pink Lady
  • Ocean-view Mediterranean dining
  • Custom dog menu available
FromUS$ 309 /nightSelect
8.1
Great1474 total reviews
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15.1 mi from City Center497 yd from Carmel del Mar Park
Children's PoolHeated PoolSpa Tub
  • Locally-sourced sustainable dining
  • Palm-lined patio for events
  • Clustered meeting rooms on one level
FromUS$ 160 /nightSelect
8.0
Great486 total reviews
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6.9 mi from City Center825 yd from Occupational Training Svc
Outdoor PoolFire PitBistro Bar
  • Seasonal local beers on tap
  • Outdoor fire pit lounge area
  • Electric car charging station
FromUS$ 186 /nightSelect
Kings InnHotel
8.4
Great2228 total reviews
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2.4 mi from City Center1392 yd from Hillcrest San Diego
Heated PoolWaffle SpotMeeting Room
  • 1960s surf culture retro decor
  • Best waffles in San Diego award
  • Accessible rooms with roll-in showers
FromUS$ 87 /nightSelect
7.8
Very good1969 total reviews
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2.7 mi from City Center391 yd from Old Town San Diego State Historic Park
Rooftop RestaurantHeated PoolAirport Shuttle
  • Spanish Colonial architecture
  • Rooftop terrace with tequila
  • Complimentary airport shuttle
FromUS$ 114 /nightSelect
8.3
Great678 total reviews
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Heated PoolKoi PondClub Lounge
  • Koi pond garden courtyard
  • Outdoor karaoke nights
  • Room key opens shopping plaza gate
FromUS$ 138 /nightSelect
8.2
Great425 total reviews
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3.5 mi from City Center673 yd from Keller Graduate School of Mgmt
Outdoor PoolFitness CenterEvent Space
  • Exclusive M Club Lounge breakfast
  • Outdoor pool with waterfall and cabanas
  • 28,000 sq ft event space
FromUS$ 176 /nightSelect
7.9
Very good1217 total reviews
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2.7 mi from City Center1511 yd from University of San Diego
Sushi BarHeated PoolShuttle Service
  • Award-winning sushi bar on-site
  • Complimentary shuttle to attractions
  • Tropical courtyard with koi ponds
FromUS$ 80 /nightSelect
6.6
Nice911 total reviews
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10.8 mi from City Center220 yd from La Jolla Cove
Rooftop TerraceParakeet CaféHeated Pool
  • Ocean views from every room
  • Rooftop terrace with sunset views
  • Parakeet Café with unique coffee
FromUS$ 134 /nightSelect
8.7
Great892 total reviews
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2.1 mi from City Center1590 yd from Old Town San Diego State Historic Park
Airport ShuttleOutdoor PoolFitness Center
  • Free shuttle to airport & Amtrak
  • Walking distance to Old Town
  • Outdoor pool with sun loungers
FromUS$ 117 /nightSelect
7.3
Very good2503 total reviews
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2.3 mi from City Center894 yd from Fashion Valley Mall
Outdoor PoolHot TubFitness Center
  • Free parking, no hidden fees
  • Largest Best Western on West Coast
  • Two outdoor hot tubs
FromUS$ 79 /nightSelect
6.8
Nice2321 total reviews
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3.8 mi from City Center1639 yd from SeaWorld San Diego
Heated PoolJacuzziPanera Bread
  • Gated property for enhanced security
  • Family rooms with bunk beds
  • On-site Panera Bread dining
FromUS$ 80 /nightSelect
7.9
Very good2865 total reviews
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2.3 mi from City Center1019 yd from Fashion Valley Mall
Heated PoolHot TubThe Bistro
  • Text front desk for requests
  • Near water skiing and kayaking
  • Free winter lobby drinks
FromUS$ 120 /nightSelect
7.8
Very good4940 total reviews
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2.3 mi from City Center929 yd from Fashion Valley Mall
Heated PoolBunz RestaurantHot Tub
  • AAA 3-Diamond Rated Hotel
  • Secure pool with key access
  • On-site Bunz restaurant
FromUS$ 76 /nightSelect
6.9
Nice241 total reviews
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10.2 mi from City Center1.1 mi from La Jolla Cove
Outdoor PoolBeach CruisersPenthouse Dining
  • Penthouse dining with ocean views
  • Complimentary bike rentals
  • Evening wine reception
FromUS$ 227 /nightSelect
8.1
Great480 total reviews
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3.8 mi from City Center251 yd from Woodbury University
Heated PoolMini GolfFree Shuttle
  • Marina views from guest rooms
  • Kids eat free at on-site dining
  • Complimentary mini golf and games
FromUS$ 99 /nightSelect
8.1
Great919 total reviews
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1345 yd from City Center1.2 mi from Seaport Village
Heated PoolMeeting SpaceOn-site Restaurant
  • On-site upscale coastal dining
  • Complimentary weekly evening socials
  • Prime Little Italy location
FromUS$ 229 /nightSelect
8.4
Great948 total reviews
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3.1 mi from City Center407 yd from Old Town San Diego State Historic Park
Outdoor PoolFitness CenterPavilion Pantry
  • Sustainability certified hotel
  • Mexican-inspired on-site dining
  • 24-hour Pavilion Pantry
FromUS$ 41 /nightSelect
8.0
Great1033 total reviews
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10.6 mi from City Center153 yd from Westfield UTC Mall
Indoor PoolFitness CenterBusiness Center
  • Free made-to-order breakfast
  • Free evening reception daily
  • Free shuttle within 5 miles
FromUS$ 181 /nightSelect
7.8
Very good2797 total reviews
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2.4 mi from City Center1053 yd from Fashion Valley Mall
Heated PoolGolf CourseOn-site Spa
  • Independently family-owned hotel
  • Adjacent to Riverwalk Golf Club
  • Year-round heated outdoor pool
FromUS$ 103 /nightSelect
8.5
Great646 total reviews
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794 yd from City Center1.0 mi from Balboa Park
Heated PoolC3 RestaurantEvent Rooms
  • Chef-interactive on-site restaurant
  • Free beer social hour
  • Bay view rooms with sunsets
FromUS$ 139 /nightSelect
8.7
Great372 total reviews
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12.1 mi from City Center394 yd from Meridian Fine Arts
Heated PoolOn-site BarFree Shuttle
  • Suites with full kitchens
  • Made-to-order omelet station
  • Free shuttle to attractions
FromUS$ 234 /nightSelect
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San Diego's affordable beach hotels offer budget-friendly access to the coast without sacrificing comfort. Expect rates starting under $150 per night at properties near Mission Bay, Shelter Island, and Harbor Island. These hotels typically include free Wi-Fi, outdoor pools, and complimentary breakfast, making them ideal for families and solo travelers. Many provide direct access to waterfront activities like kayaking, cycling, and fishing, with SeaWorld and the San Diego Zoo within a short drive.

Top picks include the Bahia Resort Hotel on Mission Bay, which features a private beach area, free parking, and a spa. The Dana on Mission Bay offers two outdoor pools and a seasonal pool bar, located just over half a mile from Mission Beach. For a marina setting, Humphreys Half Moon Inn on Shelter Island provides waterfront views and on-site concerts. Budget-conscious travelers can also choose the Best Western Plus Island Palms Hotel & Marina, with its two bay-side pools and private marina, or Kings Inn in Mission Valley, known for its 1960s-themed rooms and on-site waffle restaurant.