Cheap Hotels in San Diego

Save on San Diego stays: 160+ cheap hotels from $76/night. Compare rates for Mission Bay, La Jolla & Shelter Island. Book now for exclusive deals.

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1-50 out of 200
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  • Price: high to low
  • Guest rating: high to low
  • Popularity: high to low
9.1
Perfect514 total reviews
our site & Booking.com
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1059 yd from City Center1377 yd from Petco Park
Kids ClubIndoor PoolSHAKE Restaurant
  • 12th-floor registration desk
  • Kids club with daily activities
  • Live music weekend evenings
FromUS$ 67 /nightSelect
8.0
Great3616 total reviews
our site & Booking.com
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1735 yd from City Center1263 yd from Seaport Village
Outdoor PoolAirport ShuttleRuth's Chris
  • Private balcony in every room
  • Adjacent to cruise terminal
  • Three on-site restaurants
FromUS$ 124 /nightSelect
8.1
Great1334 total reviews
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6.0 mi from City Center521 yd from Belmont Park
Private BeachSeal SanctuaryBeach Cabanas
  • Private beach on Mission Bay
  • Rescue seal sanctuary on site
  • Suites with full kitchens
FromUS$ 95 /nightSelect
8.4
Great1478 total reviews
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5.3 mi from City Center1182 yd from SeaWorld San Diego
Heated poolsWater sportsFirefly Restaurant
  • Deluxe bay view suites
  • Complimentary SeaWorld shuttle
  • Pet-friendly welcome amenities
FromUS$ 99 /nightSelect
8.1
Great349 total reviews
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1672 yd from City Center841 yd from Petco Park
Luggage StorageOn-site BarAir Conditioning
  • 10-min walk from Santa Fe Depot
  • Modern historical design blend
  • Walk-in showers in all rooms
FromUS$ 108 /nightSelect
8.7
Great1778 total reviews
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3.8 mi from City Center123 yd from Humphreys Backstage Live
Concert VenueKoi PondMarina Access
  • On-site concert venue with live music
  • Tropical grounds with koi ponds
  • Direct marina access for water activities
FromUS$ 146 /nightSelect
8.4
Great730 total reviews
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1.3 mi from City Center346 yd from Seaport Village
Indoor PoolFitness CenterNY West
  • Two-room suites with separate living
  • Complimentary evening social hour
  • Made-to-order free breakfast
FromUS$ 228 /nightSelect
7.6
Very good360 total reviews
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10.6 mi from City Center
M LoungeOutdoor BarEvent Spaces
  • M Lounge with panoramic views
  • Outdoor bar with fire pit
  • 23,000 sq ft event spaces
FromUS$ 145 /nightSelect
8.5
Great2105 total reviews
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4.1 mi from City Center155 yd from Shelter Island Yacht Basin
Private MarinaBlue Wave GrillBike Rentals
  • Shelter Island private marina
  • Bungalow rooms with marina views
  • Complimentary bike rentals
FromUS$ 100 /nightSelect
8.1
Great1098 total reviews
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2.9 mi from City Center896 yd from Travelers Aid Society
Panorama GrillOutdoor PoolAirport Shuttle
  • Panoramic marina and harbor views
  • On-site dining with marina views
  • Family-friendly live music events
FromUS$ 152 /nightSelect
7.9
Very good70 total reviews
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10.5 mi from City Center1556 yd from La Jolla Cove
Heated PoolFire PitsChildren's Pool
  • Complimentary beach chair and umbrella setup
  • Oceanfront dining using local ingredients
  • Daily s'mores and movie nights
FromUS$ 289 /nightSelect
6.4
Nice831 total reviews
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2.4 mi from City Center1435 yd from Hillcrest San Diego
Heated PoolFitness CenterBusiness Center
  • Warm cookie welcome on arrival
  • Bunk-bed family suite option
  • Heated pool and spa courtyard
FromUS$ 126 /nightSelect
8.1
Great1472 total reviews
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15.1 mi from City Center497 yd from Carmel del Mar Park
Children's PoolHeated PoolSpa Tub
  • Locally-sourced sustainable dining
  • Palm-lined patio for events
  • Clustered meeting rooms on one level
FromUS$ 160 /nightSelect
8.0
Great487 total reviews
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6.9 mi from City Center825 yd from Occupational Training Svc
Outdoor PoolFire PitBistro Bar
  • Seasonal local beers on tap
  • Outdoor fire pit lounge area
  • Electric car charging station
FromUS$ 186 /nightSelect
Kings InnHotel
8.4
Great2249 total reviews
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2.4 mi from City Center1392 yd from Hillcrest San Diego
Heated PoolWaffle SpotMeeting Room
  • 1960s surf culture retro decor
  • Best waffles in San Diego award
  • Accessible rooms with roll-in showers
FromUS$ 87 /nightSelect
7.8
Very good1969 total reviews
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2.7 mi from City Center391 yd from Old Town San Diego State Historic Park
Rooftop RestaurantHeated PoolAirport Shuttle
  • Spanish Colonial architecture
  • Rooftop terrace with tequila
  • Complimentary airport shuttle
FromUS$ 114 /nightSelect
8.3
Great673 total reviews
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Heated PoolKoi PondClub Lounge
  • Koi pond garden courtyard
  • Outdoor karaoke nights
  • Room key opens shopping plaza gate
FromUS$ 138 /nightSelect
8.2
Great425 total reviews
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3.5 mi from City Center673 yd from Keller Graduate School of Mgmt
Outdoor PoolFitness CenterEvent Space
  • Exclusive M Club Lounge breakfast
  • Outdoor pool with waterfall and cabanas
  • 28,000 sq ft event space
FromUS$ 170 /nightSelect
6.7
Nice911 total reviews
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10.8 mi from City Center220 yd from La Jolla Cove
Rooftop TerraceParakeet CaféHeated Pool
  • Ocean views from every room
  • Rooftop terrace with sunset views
  • Parakeet Café with unique coffee
FromUS$ 134 /nightSelect
8.7
Great893 total reviews
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2.1 mi from City Center1590 yd from Old Town San Diego State Historic Park
Airport ShuttleOutdoor PoolFitness Center
  • Free shuttle to airport & Amtrak
  • Walking distance to Old Town
  • Outdoor pool with sun loungers
FromUS$ 117 /nightSelect
7.3
Very good2503 total reviews
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2.3 mi from City Center894 yd from Fashion Valley Mall
Outdoor PoolHot TubFitness Center
  • Free parking, no hidden fees
  • Largest Best Western on West Coast
  • Two outdoor hot tubs
FromUS$ 79 /nightSelect
6.7
Nice2325 total reviews
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3.8 mi from City Center1639 yd from SeaWorld San Diego
Heated PoolJacuzziPanera Bread
  • Gated property for enhanced security
  • Family rooms with bunk beds
  • On-site Panera Bread dining
FromUS$ 80 /nightSelect
7.9
Very good2903 total reviews
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2.3 mi from City Center1019 yd from Fashion Valley Mall
Heated PoolHot TubThe Bistro
  • Text front desk for requests
  • Near water skiing and kayaking
  • Free winter lobby drinks
FromUS$ 149 /nightSelect
7.8
Very good4967 total reviews
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2.3 mi from City Center929 yd from Fashion Valley Mall
Heated PoolBunz RestaurantHot Tub
  • AAA 3-Diamond Rated Hotel
  • Secure pool with key access
  • On-site Bunz restaurant
FromUS$ 76 /nightSelect
8.1
Great920 total reviews
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1345 yd from City Center1.2 mi from Seaport Village
Heated PoolMeeting SpaceOn-site Restaurant
  • On-site upscale coastal dining
  • Complimentary weekly evening socials
  • Prime Little Italy location
FromUS$ 229 /nightSelect
8.4
Great948 total reviews
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3.1 mi from City Center407 yd from Old Town San Diego State Historic Park
Outdoor PoolFitness CenterPavilion Pantry
  • Sustainability certified hotel
  • Mexican-inspired on-site dining
  • 24-hour Pavilion Pantry
FromUS$ 41 /nightSelect
7.8
Very good2797 total reviews
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2.4 mi from City Center1053 yd from Fashion Valley Mall
Heated PoolGolf CourseOn-site Spa
  • Independently family-owned hotel
  • Adjacent to Riverwalk Golf Club
  • Year-round heated outdoor pool
FromUS$ 103 /nightSelect
8.4
Great642 total reviews
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794 yd from City Center1.0 mi from Balboa Park
Heated PoolC3 RestaurantEvent Rooms
  • Chef-interactive on-site restaurant
  • Free beer social hour
  • Bay view rooms with sunsets
FromUS$ 139 /nightSelect
8.7
Great372 total reviews
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12.1 mi from City Center394 yd from Meridian Fine Arts
Heated PoolOn-site BarFree Shuttle
  • Suites with full kitchens
  • Made-to-order omelet station
  • Free shuttle to attractions
FromUS$ 234 /nightSelect
7.0
Very good1591 total reviews
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986 yd from City Center1.1 mi from Seaport Village
Rooftop PoolShuttle ServiceFire Pit
  • Adults-only boutique in Little Italy
  • Panoramic harbor view rooftop
  • Complimentary airport shuttle service
FromUS$ 127 /nightSelect
8.2
Great574 total reviews
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1620 yd from City Center839 yd from Petco Park
Speakeasy BarBar MoxyGame Room
  • Clandestine speakeasy behind bookshelf
  • Front desk doubles as bar
  • Motion-activated LED guidelights
FromUS$ 269 /nightSelect
9.0
Perfect769 total reviews
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1.1 mi from City Center942 yd from Seaport Village
Rooftop PoolFire PitOn-site Restaurant
  • Bay-view rooftop pool
  • Adjacent to cruise terminal
  • Fire pit patio overlooking bay
FromUS$ 260 /nightSelect
8.2
Great365 total reviews
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18.2 mi from City Center
Heated PoolFire PitsShuttle Service
  • Heated outdoor pool and hot tub
  • Outdoor lounge with cozy fire pits
  • Complimentary shuttle to local spots
FromUS$ 168 /nightSelect
7.9
Very good598 total reviews
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1345 yd from City Center1.2 mi from Seaport Village
Rooftop PoolHot TubValet Parking
  • Heated rooftop pool with city views
  • On-site coastal dining at Bayside Kitchen
  • Children's menu available
FromUS$ 155 /nightSelect
8.0
Great307 total reviews
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5.8 mi from City Center280 yd from Maric College
Golf CourseOutdoor PoolHot Tub
  • On-site 9-hole par-3 golf course
  • Heated outdoor pool and sundeck
  • Daily happy hour at lounge bar
FromUS$ 105 /nightSelect
8.0
Great595 total reviews
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7.6 mi from City Center414 yd from Crystal Pier San Diego
Heated PoolHot TubBBQ Area
  • Suites with full kitchenettes
  • Outdoor barbecue grills
  • One block from ocean
FromUS$ 99 /nightSelect
8.9
Great797 total reviews
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3.9 mi from City Center109 yd from Humphreys Concerts by the Bay
Marina SlipsHeated PoolShuttle Service
  • First green marina on West Coast
  • Private marina with boat slips
  • No resort fees or hidden charges
FromUS$ 144 /nightSelect
8.0
Great1124 total reviews
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2.5 mi from City Center1623 yd from Old Town San Diego State Historic Park
Heated PoolFire PitsFitness Center
  • Outdoor patio with fire pits
  • Heated outdoor pool
  • Daily-changing hot breakfast
FromUS$ 89 /nightSelect
8.3
Great420 total reviews
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10.9 mi from City Center
Outdoor PoolFitness CenterSpa
  • Full kitchens in every suite
  • Complimentary evening socials
  • Split-level family suites
FromUS$ 189 /nightSelect
6.0
Nice1 total review
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1454 yd from City Center1221 yd from Seaport Village
Flat-screen TVHair DryerDryer
  • Flat-screen TV in rooms
  • Hair dryer provided
  • In-room dryer
FromUS$ 153 /nightSelect
8.7
Great339 total reviews
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3.3 mi from City Center296 yd from National University
Outdoor PoolWater SportsFire Pit
  • Paddleboard and kayak rentals
  • Adjacent to 46-acre park
  • Outdoor fireplace lounge
FromUS$ 186 /nightSelect
8.1
Great887 total reviews
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2.6 mi from City Center1558 yd from Old Town San Diego State Historic Park
Heated PoolGame RoomChildren's Pool
  • Fully-equipped kitchens in all suites
  • Complimentary grocery shopping service
  • Complimentary evening social Wednesdays
FromUS$ 94 /nightSelect
7.0
Very good52 total reviews
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2.4 mi from City Center1127 yd from Fashion Valley Mall
Full KitchensHeated PoolGame Room
  • Spacious suites with full kitchens
  • Outdoor heated pool and hot tub
  • Game room and arcade on site
FromUS$ 187 /nightSelect
8.0
Great1757 total reviews
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849 yd from City Center1570 yd from Balboa Park
Outdoor PoolFitness CenterMeeting Space
  • Free shuttle to top attractions
  • Manager's reception with free drinks
  • Rotating breakfast with local dishes
FromUS$ 119 /nightSelect
7.5
Very good1739 total reviews
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2.9 mi from City Center1150 yd from Old Town San Diego State Historic Park
Bunk Bed SuitesOutdoor PoolHot Tub
  • Two-bedroom suites with bunk beds
  • Near San Diego Zoo and SeaWorld
  • Heated outdoor pool and hot tub
FromUS$ 92 /nightSelect
8.5
Great636 total reviews
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2.6 mi from City Center635 yd from Old Town San Diego State Historic Park
Outdoor PoolSpa TubFitness Center
  • Historic Old Town location
  • On-site Bistro with Starbucks
  • Nearby kayaking and scuba diving
FromUS$ 87 /nightSelect
9.3
Perfect470 total reviews
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3.3 mi from City Center361 yd from ASW Base San Diego
Rooftop TerraceOutdoor PoolEV Charging
  • Two furnished rooftop terraces
  • Complimentary grocery shopping service
  • Historic Liberty Station waterfront
FromUS$ 175 /nightSelect
8.7
Great1962 total reviews
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10.6 mi from City Center703 yd from La Jolla Cove
Heated PoolBike ToursPrivate Balcony
  • In-room breakfast from The Cottage
  • Ocean-view rooms with private balcony
  • Welcome package with local discounts
FromUS$ 135 /nightSelect
5.2
Needs improvement864 total reviews
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2.8 mi from City Center1338 yd from Old Town San Diego State Historic Park
Outdoor PoolSnack BarPet Friendly
  • Pet-friendly policy up to two dogs
  • Minutes to Old Town and SeaWorld
  • Outdoor plunge pool available
FromUS$ 76 /nightSelect
8.7
Great1095 total reviews
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9.9 mi from City Center625 yd from Hermosa Terrace Park
Heated PoolHot TubFire Pit
  • Steps from Windansea Beach
  • Free beach chair and toy rentals
  • Outdoor heated pool and Jacuzzi
FromUS$ 76 /nightSelect
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San Diego offers a range of budget-friendly hotels without sacrificing location or essential amenities. For travelers watching their wallet, rates often start around $76 per night, with many properties providing free Wi-Fi, outdoor pools, and on-site dining. Key neighborhoods for affordable stays include Mission Valley, Shelter Island, and Mission Bay, all within short drives of major attractions like SeaWorld and Balboa Park. Most cheap hotels in San Diego offer compact refrigerators and coffee makers in rooms, plus free parking-a significant perk in a car-centric city.

Top picks include the Best Western Plus Island Palms Hotel & Marina on Shelter Island, which features a private marina and bay-side pools, and the Kings Inn in Mission Valley, a retro-style property with a waffle restaurant and Mexican eatery on site. For waterfront value, Humphreys Half Moon Inn on Shelter Island provides marina views and free bicycle rentals, while the Dana on Mission Bay sits on 10 landscaped acres with two pools and beach access. Each hotel balances cost with quality, making them ideal for families, business travelers, or anyone seeking a practical base for exploring San Diego.